PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027112464.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 310aa    MW: 35511.8 Da    PI: 8.5709
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027112464.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.6e-16126216199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v k  +l+lp+ f++ h  +   ++t++lede+ +++  k+    ++++  l++GW +F  a++L egD++vF+++     +l+v 
  XP_027112464.1 126 FVKPMIRSNVKKGFWLSLPRLFCKLHLPD--HDTTIVLEDENRKEYITKY--LAQRRG--LSAGWMGFSIAHKLVEGDVLVFHMVI--ANKLKVY 212
                     89*********************999433..5679***************..666655..9**********************764..4455788 PP

                     EE-S CS
              B3  96 vfrk 99 
                     v+r+
  XP_027112464.1 213 VIRS 216
                     7775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MQKNVSFINR HMMKRKKRFE TMRKLLEIDE MPWGIRFKPK QQEEICLEEQ RYEEEQQAHS  60
PSSKFSEHKL FHPTLRVGAK KPSQSRSCKR RMVGMHDLCG QIKVTSSVMQ RAEAVQETLD  120
AKFPSFVKPM IRSNVKKGFW LSLPRLFCKL HLPDHDTTIV LEDENRKEYI TKYLAQRRGL  180
SAGWMGFSIA HKLVEGDVLV FHMVIANKLK VYVIRSSRLA EVDAALCLLQ LEGPATGNES  240
GHRGDDCGDP QPTGEESKSC SQPECENISD KDMLDNNLGL VTGRPESIDE HLQLALEGRR  300
GSFSGLHYRD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11440KRKKRFETMRKLLEIDEMPWGIRFKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-37B3 family protein