PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112466.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 457aa MW: 51363.9 Da PI: 7.3403

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.2	5.5e-17	99	187	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +k +++s+v+ +l+lpk+f++ h +k ++ ++l de+g++++ k+ ++k++ l++GW++F a++L egD++vF+l++ l+v + XP_027112466.1 99 VKHMLRSHVTGGFWLSLPKQFCDVHL-PK-KNDIVVLVDENGEEYKTKYLVEKNG----LSGGWRGFSIAHNLLEGDVLVFQLIKPCV--LKVYI 185 688999**************8884.33.3448***********777777....*********************998444..47777 PP E- CS B3 97 fr 98 +r XP_027112466.1 186 VR 187 66 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MAISQFSPSK RSQYDPSTKL KQRKASEFKK KLVKKNPCGT QHDKINKGET HNIEKPLISY 60 KKIGDKTADH SAYGKPKSSA LHRAHEVQAK LPSNFPCCVK HMLRSHVTGG FWLSLPKQFC 120 DVHLPKKNDI VVLVDENGEE YKTKYLVEKN GLSGGWRGFS IAHNLLEGDV LVFQLIKPCV 180 LKVYIVRANG LTELDGAICL LNLDFQDKSI DNANLKEENE DVKNCKTAEL DYSGPLANVL 240 ERGIVAVSSG HMPESARSAS DNNELSLEVL DGVRFSESDM QFKDVKDFNG FSILVDGLVI 300 DSEIPLHLRA KYYQLCCSQN SFLHDHLIKG LNCKLAAGII SETVNIADAI RAAKLKTSCE 360 YLQTWDKTLK AFEDMGMAVE FLRARIKALI SLPTEQEESM KSKTAERAQL QEEMRNLETK 420 HLNVKEVIRT LDADIKALEV QEENLEEIFK EKATAPW

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MAISQFSPSK RSQYDPSTKL KQRKASEFKK KLVKKNPCGT QHDKINKGET HNIEKPLISY  60
KKIGDKTADH SAYGKPKSSA LHRAHEVQAK LPSNFPCCVK HMLRSHVTGG FWLSLPKQFC  120
DVHLPKKNDI VVLVDENGEE YKTKYLVEKN GLSGGWRGFS IAHNLLEGDV LVFQLIKPCV  180
LKVYIVRANG LTELDGAICL LNLDFQDKSI DNANLKEENE DVKNCKTAEL DYSGPLANVL  240
ERGIVAVSSG HMPESARSAS DNNELSLEVL DGVRFSESDM QFKDVKDFNG FSILVDGLVI  300
DSEIPLHLRA KYYQLCCSQN SFLHDHLIKG LNCKLAAGII SETVNIADAI RAAKLKTSCE  360
YLQTWDKTLK AFEDMGMAVE FLRARIKALI SLPTEQEESM KSKTAERAQL QEEMRNLETK  420
HLNVKEVIRT LDADIKALEV QEENLEEIFK EKATAPW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	7e-41	B3 family protein