PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027112712.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 513aa    MW: 56652.3 Da    PI: 7.8246
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027112712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-16154200148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd  l ++vk +G + W+ Ia++m  gR +kqc++rw+++l
   XP_027112712.1 154 KGQWTEEEDNTLRKLVKHFGVKKWAQIAEKMV-GRAGKQCRERWHNHL 200
                      799*****************************.*************97 PP
2Myb_DNA-binding54.43e-17206248145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE++llv+a+ + G++ W+ I ++++ gRt++++k++w+
   XP_027112712.1 206 KDAWSQEEEKLLVEAHIEVGNR-WAEIGKRIP-GRTENSIKNHWN 248
                      679*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    
MEGGGGLGGS FPYGNYCQGD HHLRLPLLKP RPPLTAIDRF LCGQRHFSQL EILANFKNKA  60
TLVPVNSDFV SSSSGGAIHG HAGGGGLLSW PITLPPSRDA SSSVNGVLCN KESTPNLSPE  120
MNPNVGLEKE EDLPRVPRGT GRRGKGDPSV ALIKGQWTEE EDNTLRKLVK HFGVKKWAQI  180
AEKMVGRAGK QCRERWHNHL RPDIKKDAWS QEEEKLLVEA HIEVGNRWAE IGKRIPGRTE  240
NSIKNHWNAT RRRQNSKKKF KKPEGVHNGR NQSTILQEYI KSTCFNDDSL INISTGPSST  300
TMIPVNSAST QITPSNSVIS EDPTSAHFNM LYPELSQSAS GDSSSYLAQH SYDDEMNFMQ  360
NLFGSYNLNV STSCKNDKGK APLDIGINQK DKCSASFNSS GYNSTNSNNQ DFGGNLDYGF  420
FPSFAEPSLP TRTYLGDQES NQPIRMYSDA YLSHILDGGN VLCALPEVYP SNMNMEKMMI  480
DQASPSVGKE VDLIEMISNS QFARKNATNN FVF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.17e-63MYB family protein