PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027112722.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 284aa    MW: 32583.7 Da    PI: 10.006
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027112722.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.5e-19139228198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v +  +l lp +f+e+h    +++++++lede+g ++e  +i ++++    l++GW+ F+ +++L++gD +vF+l++ ++f  +v 
  XP_027112722.1 139 FIKSMVRSHVYSCFWLGLPSSFCEDHLP--KSTVDMVLEDEDGLEFEAVYISKRSG----LSGGWRAFALEHKLDDGDALVFELIEPTRF--KVY 225
                     89************************53..3789****************655555....9***********************987777..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_027112722.1 226 IVR 228
                     877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MAKDNNANTY EEARKQRVLD NKKRFEDLGI LSISKSLSDV SKSEKKSKQR SLSRPKPNDV  60
YMVEPRRSSR ARTQVTSYRD DVDVDLPRMR KRPKWSSSWA SYLARPMEEV RAASYEERSR  120
ARLSAEILQS NLQLENPSFI KSMVRSHVYS CFWLGLPSSF CEDHLPKSTV DMVLEDEDGL  180
EFEAVYISKR SGLSGGWRAF ALEHKLDDGD ALVFELIEPT RFKVYIVRAV SCSTQEEGGS  240
DAGERPKEKT KQRKKDNTRS KDSIRPEEDA SSKASGRRRS SRLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283GRRRSSRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-61B3 family protein