PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027112729.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 283aa    MW: 32455.5 Da    PI: 10.006
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027112729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.5e-19138227198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v +  +l lp +f+e+h    +++++++lede+g ++e  +i ++++    l++GW+ F+ +++L++gD +vF+l++ ++f  +v 
  XP_027112729.1 138 FIKSMVRSHVYSCFWLGLPSSFCEDHLP--KSTVDMVLEDEDGLEFEAVYISKRSG----LSGGWRAFALEHKLDDGDALVFELIEPTRF--KVY 224
                     89************************53..3789****************655555....9***********************987777..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_027112729.1 225 IVR 227
                     877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MAKDNNANTY EEARKQRVLD NKKRFEDLGI LSISKSLSDV SKSEKKSKRS LSRPKPNDVY  60
MVEPRRSSRA RTQVTSYRDD VDVDLPRMRK RPKWSSSWAS YLARPMEEVR AASYEERSRA  120
RLSAEILQSN LQLENPSFIK SMVRSHVYSC FWLGLPSSFC EDHLPKSTVD MVLEDEDGLE  180
FEAVYISKRS GLSGGWRAFA LEHKLDDGDA LVFELIEPTR FKVYIVRAVS CSTQEEGGSD  240
AGERPKEKTK QRKKDNTRSK DSIRPEEDAS SKASGRRRSS RLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275282GRRRSSRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-61B3 family protein