PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112953.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 415aa MW: 45901.1 Da PI: 5.4162

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	264	286	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k F++ L H +H XP_027112953.1 264 YRCETCNKAFRSYQALGGHRASH 286 9***********99999998887 PP
2	zf-C2H2	10.7	0.0017	325	347	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C + Fs+ L H r+H XP_027112953.1 325 HECPICYRIFSSGQALGGHKRSH 347 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MEKHRCKLCF RSFANGRALG GHMRSHMMNL CAATKAKQEF IKEEHEEEEV MNINDERQIS 60 EEFESVPSSS FSSSSSSEDE EINPKKKVDM VMDQEFCFGG VEVTAAADSV VVQDRESETE 120 SSKNPICRRS KRVRKSRVSD AVQFSGYIND SMAELKKPKS GKQGRFSCEL PFADAEPVSS 180 ISDTTTEEVV AYCLMMLSRD KWKKEDNEEE AMYGGEEVEE EEAEEGKADH EEPEKQKKNK 240 DAKSQYCHDF GVVKVTKSRT RGKYRCETCN KAFRSYQALG GHRASHKRIK AHNSNSTEEE 300 VAGVETGNAA SAAAVSSVVV EEKIHECPIC YRIFSSGQAL GGHKRSHVMG AAAAAAAAAA 360 TTHVSIRTSP AAKPFSRFGE AFIDLNLPAP VDDDEISQIE LSAVSDAEFV NPFKQ

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MEKHRCKLCF RSFANGRALG GHMRSHMMNL CAATKAKQEF IKEEHEEEEV MNINDERQIS  60
EEFESVPSSS FSSSSSSEDE EINPKKKVDM VMDQEFCFGG VEVTAAADSV VVQDRESETE  120
SSKNPICRRS KRVRKSRVSD AVQFSGYIND SMAELKKPKS GKQGRFSCEL PFADAEPVSS  180
ISDTTTEEVV AYCLMMLSRD KWKKEDNEEE AMYGGEEVEE EEAEEGKADH EEPEKQKKNK  240
DAKSQYCHDF GVVKVTKSRT RGKYRCETCN KAFRSYQALG GHRASHKRIK AHNSNSTEEE  300
VAGVETGNAA SAAAVSSVVV EEKIHECPIC YRIFSSGQAL GGHKRSHVMG AAAAAAAAAA  360
TTHVSIRTSP AAKPFSRFGE AFIDLNLPAP VDDDEISQIE LSAVSDAEFV NPFKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-44	C2H2 family protein