PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027113287.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 685aa MW: 78802.9 Da PI: 7.4358

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027113287.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.6	3.1e-21	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ +w+vt ++++HnHel XP_027113287.1 62 EFYSDFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTTNDNKPQRNRKSSRCGCQAYMRISKTTelgLPEWRVTGFVNHHNHELL 155 6************9998877356667999***********999******************99766679***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence
MSEEAAQMMV VYDDHSDQRS LSFEDTSSTE ESPDKTRLSI ETSNDVVPYI GQRFASHDAA 60 YEFYSDFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTTND NKPQRNRKSS 120 RCGCQAYMRI SKTTELGLPE WRVTGFVNHH NHELLEPNQV RFLPAYRTIS DADKSRILMF 180 AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSCR KVDPEDESID LLRMCRNIKD 240 KDPNFMFDFT LDLDNRLENI AWSYASSIQS YEIFGDAVVF DTTHRLTAFD MPLGIWVGIN 300 NYGMPCFFGC VLLREENLRT YSWALKAFLG FMNAKAPQTI LTDQNMCLKE AIELEMPSAK 360 HALCIWLIVA KFPSWFNAVL GERYNEWKAE FYHLYNLEST EDFELGWRDM VNSFGLHSNR 420 HIASLFALRS LWALPYLRSH FFAGMTTTVH SKSINAFIQR FLSAQTRLAH FVEQVDILAA 480 VTVDFKDQMG EQQTMQQNLQ NLCLKTGAPM ESHAATVLTP FAFSKLQEQL VLAAHYASFQ 540 MEDCFLVRHH TKLDGGRKVY WVPREGIISC SCHQFEFSGI LCRHALRVLS TGNCFQIPDR 600 YLPLRWLRMS TPSAKLHQTT PSEHTDRIQL LQTILSSLIT ECAKSRERLD IATEQVSILL 660 SRIREHPVPV CPQGTRENSA NPRNH

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence

MSEEAAQMMV VYDDHSDQRS LSFEDTSSTE ESPDKTRLSI ETSNDVVPYI GQRFASHDAA  60
YEFYSDFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTTND NKPQRNRKSS  120
RCGCQAYMRI SKTTELGLPE WRVTGFVNHH NHELLEPNQV RFLPAYRTIS DADKSRILMF  180
AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSCR KVDPEDESID LLRMCRNIKD  240
KDPNFMFDFT LDLDNRLENI AWSYASSIQS YEIFGDAVVF DTTHRLTAFD MPLGIWVGIN  300
NYGMPCFFGC VLLREENLRT YSWALKAFLG FMNAKAPQTI LTDQNMCLKE AIELEMPSAK  360
HALCIWLIVA KFPSWFNAVL GERYNEWKAE FYHLYNLEST EDFELGWRDM VNSFGLHSNR  420
HIASLFALRS LWALPYLRSH FFAGMTTTVH SKSINAFIQR FLSAQTRLAH FVEQVDILAA  480
VTVDFKDQMG EQQTMQQNLQ NLCLKTGAPM ESHAATVLTP FAFSKLQEQL VLAAHYASFQ  540
MEDCFLVRHH TKLDGGRKVY WVPREGIISC SCHQFEFSGI LCRHALRVLS TGNCFQIPDR  600
YLPLRWLRMS TPSAKLHQTT PSEHTDRIQL LQTILSSLIT ECAKSRERLD IATEQVSILL  660
SRIREHPVPV CPQGTRENSA NPRNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein