PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027114613.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HB-other

Protein Properties

Length: 514aa MW: 57400.9 Da PI: 7.199

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027114613.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.5e-18	16	71	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+e+Le+l+ +++yp+++ +ee Ak++gLte+qV+ WF+ rR k+k+ XP_027114613.1 16 KKRIVKTRAQVEALEKLYDEHKYPTEALKEEFAKSVGLTEKQVSGWFCHRRLKDKR 71 89****************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MGEHSEDDKV IPEMNKKRIV KTRAQVEALE KLYDEHKYPT EALKEEFAKS VGLTEKQVSG 60 WFCHRRLKDK RLANPEAYAN GRQDRSSSIL QDRGSGLRQD SCGSTKQGDD RNYDPREVES 120 RRLVGQEYSA ADLTYELGSH YTGNHGSADD TSSGSSSSLR NMSFPQDRDR FALANSRYQA 180 QSLPMEIKEV KPRSGPSGYL KVKGQVENAA ITAVKRQLGR HYRADGPPLG VEFDPLPPGA 240 FESSIQEPPN ESYYAEEAVL PRSPENSMVH KNSNLGSGSQ YNPKASSHDS DMERTRFKMA 300 HGPDRSENCF PPKYKQKSPL HKHGDFYAGR SSSMDIHEGS ARKTRVYDSQ DPDRKAKYGD 360 GGMSLDSFSG HRHSRLHNPR VDSDHADPWL QNYNDMNSNV APAEHFVSKS SNLASKGVEY 420 DDFTHKGLSK RMAKEAKSSG ERLTLNGNFD PVQPKNGLTS AKRVGNELPQ EHYSKKTSWS 480 EVPPWTNQAP RSAAEMPTSF SEDDETADTS SSVD

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MGEHSEDDKV IPEMNKKRIV KTRAQVEALE KLYDEHKYPT EALKEEFAKS VGLTEKQVSG  60
WFCHRRLKDK RLANPEAYAN GRQDRSSSIL QDRGSGLRQD SCGSTKQGDD RNYDPREVES  120
RRLVGQEYSA ADLTYELGSH YTGNHGSADD TSSGSSSSLR NMSFPQDRDR FALANSRYQA  180
QSLPMEIKEV KPRSGPSGYL KVKGQVENAA ITAVKRQLGR HYRADGPPLG VEFDPLPPGA  240
FESSIQEPPN ESYYAEEAVL PRSPENSMVH KNSNLGSGSQ YNPKASSHDS DMERTRFKMA  300
HGPDRSENCF PPKYKQKSPL HKHGDFYAGR SSSMDIHEGS ARKTRVYDSQ DPDRKAKYGD  360
GGMSLDSFSG HRHSRLHNPR VDSDHADPWL QNYNDMNSNV APAEHFVSKS SNLASKGVEY  420
DDFTHKGLSK RMAKEAKSSG ERLTLNGNFD PVQPKNGLTS AKRVGNELPQ EHYSKKTSWS  480
EVPPWTNQAP RSAAEMPTSF SEDDETADTS SSVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	8e-71	HB-other family protein