PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027114688.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 160aa MW: 17708.6 Da PI: 8.4991

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027114688.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	7.2e-06	1	33	7	45
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45 ++Er+RR+++ + f+ L ++lP + K +K+ +Le XP_027114688.1 1 MAERKRRKHLGQLFSSLSSILPGL------KKEKVKTLE 33 58*********************9......666666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence
MAERKRRKHL GQLFSSLSSI LPGLKKEKVK TLEEQVTKQT VESVVLVKKS QLLVADDVSS 60 DERGCNNNNQ LVFPQIEAKV CDKEVLLKVH CENHQPGLLI KLLSKVEKLN LAVTNTSVTP 120 FGNSALEVTI IAEMEKEFNM TTKELAKNLG SALPLVAQES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	4	30	RKRRKHLGQLFSSLSSILPGLKKEKVK
2	5	30	KRRKHLGQLFSSLSSILPGLKKEKVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-25	bHLH family protein