PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027115032.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 216aa MW: 24711.5 Da PI: 9.264

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027115032.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.6	9.3e-30	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ XP_027115032.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFG 58 8**********************************************95 PP
2	K-box	82.7	8.1e-28	79	171	6	98
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ +e+++++l+qe a + k+ie L+ ++R+llGe+L s++++eLqqLe+qLe+s++ iR++K++++ eqie+l++kek l+ en +L +k XP_027115032.1 79 NNPSAEQNMQQLKQETASMVKKIELLEASKRKLLGEGLVSCTVEELQQLERQLERSVNCIRARKMQVFQEQIEKLKEKEKVLEAENDKLLEKC 171 344899***********************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFGSS 60 SMKEIIERYQ KHAKDVRANN PSAEQNMQQL KQETASMVKK IELLEASKRK LLGEGLVSCT 120 VEELQQLERQ LERSVNCIRA RKMQVFQEQI EKLKEKEKVL EAENDKLLEK CGAEPPQTSK 180 ENTEIVPCTE SSEVSDVETG LFIGPPERRN KLVLKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	2e-77	MIKC_MADS family protein