PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027115454.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ERF
Protein Properties Length: 236aa    MW: 25470.4 Da    PI: 6.5256
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027115454.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1856106155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + ++GVr ++ +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+ +l+g
  XP_027115454.1  56 PVFRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPSPEMAARAYDVAAYCLKG 106
                     579****887.**********843...6*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MEMLLQQPPA PPCINEDDLA PSSSGSTTTA TTPTAAISRR SDTSSSSAAS GGTRHPVFRG  60
VRKRRWGKWV SEIREPRKKS RIWLGSFPSP EMAARAYDVA AYCLKGPKAQ LNFPDDIQLL  120
PRPLTTTARD IQAAASLAAR VAMAEGKKTT TMCGSSSTTA TTTAAHIGDD GSGSDDFWRD  180
IELPELIEAW PGENDNSTSV TVRRDYVWEL RYWSASSSLS SCSGMFSGDI ATSPME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.18e-44ERF family protein