PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027115935.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 389aa MW: 42671.1 Da PI: 4.6749

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027115935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrW +eEde+l++++kq G g+W++ ++ g+ R++k+c++rw +yl XP_027115935.1 14 RGRWAAEEDEKLINYIKQNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	53	8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e ++++++ G++ W++Ia++++ gRt++++k++w+++l XP_027115935.1 67 RGNFTREEEETIINLHRSVGNK-WSLIASKLP-GRTDNEVKNYWNSHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MGRAPCCEKV GLRRGRWAAE EDEKLINYIK QNGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNF TREEEETIIN LHRSVGNKWS LIASKLPGRT DNEVKNYWNS HLSRKIYSFR 120 SSDGSSVTTL DMVNMPSKSK RKGGRVSRAV AKKYSMHPIT KAPITTATNE TSSSSKISST 180 SGVQEATTAA QNAQVGMVEA TTHGVPESAA AAEKVSDDAA VGAVEESGKH QLQPMANNNY 240 DYDESEGGCI NSMHDIRCDG GEGCARALLV PSPEKLEGEK GVAGPNDELD DVTLLLESVL 300 ESELMDLSEI SVRTGDTENE SIMYPESASI NKDSDSGASY SNSDTGDGLY DCFPPLDSYF 360 NHTWDAEYAV PGFGLWDQED DDVLWPWES

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MGRAPCCEKV GLRRGRWAAE EDEKLINYIK QNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNF TREEEETIIN LHRSVGNKWS LIASKLPGRT DNEVKNYWNS HLSRKIYSFR  120
SSDGSSVTTL DMVNMPSKSK RKGGRVSRAV AKKYSMHPIT KAPITTATNE TSSSSKISST  180
SGVQEATTAA QNAQVGMVEA TTHGVPESAA AAEKVSDDAA VGAVEESGKH QLQPMANNNY  240
DYDESEGGCI NSMHDIRCDG GEGCARALLV PSPEKLEGEK GVAGPNDELD DVTLLLESVL  300
ESELMDLSEI SVRTGDTENE SIMYPESASI NKDSDSGASY SNSDTGDGLY DCFPPLDSYF  360
NHTWDAEYAV PGFGLWDQED DDVLWPWES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	3e-70	MYB family protein