PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027115936.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 353aa    MW: 38486.4 Da    PI: 4.5223
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027115936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-173176148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T eE+e ++++++  G++ W++Ia++++ gRt++++k++w+++l
   XP_027115936.1 31 RGNFTREEEETIINLHRSVGNK-WSLIASKLP-GRTDNEVKNYWNSHL 76
                     89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MSKPTISAGL LRCGKSCRLR WINYLRADLK RGNFTREEEE TIINLHRSVG NKWSLIASKL  60
PGRTDNEVKN YWNSHLSRKI YSFRSSDGSS VTTLDMVNMP SKSKRKGGRV SRAVAKKYSM  120
HPITKAPITT ATNETSSSSK ISSTSGVQEA TTAAQNAQVG MVEATTHGVP ESAAAAEKVS  180
DDAAVGAVEE SGKHQLQPMA NNNYDYDESE GGCINSMHDI RCDGGEGCAR ALLVPSPEKL  240
EGEKGVAGPN DELDDVTLLL ESVLESELMD LSEISVRTGD TENESIMYPE SASINKDSDS  300
GASYSNSDTG DGLYDCFPPL DSYFNHTWDA EYAVPGFGLW DQEDDDVLWP WES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.14e-42MYB family protein