PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027116055.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 493aa MW: 51823.1 Da PI: 8.2593

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027116055.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	6.2e-12	52	77	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C yG+rC+F+H++ XP_027116055.1 52 DQADCIYYLRTGLCGYGARCRFNHPR 77 6789********************96 PP
2	zf-CCCH	37.2	5e-12	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f++rtG Ck+G++Ck++H++ XP_027116055.1 98 QPVCQFYMRTGNCKFGASCKYHHPR 122 689********************96 PP
3	zf-CCCH	34.1	4.5e-11	143	168	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ +tG+CkyG +Ck++H++ XP_027116055.1 143 GEKDCSYYVKTGQCKYGVTCKYHHPQ 168 7889********************97 PP
4	zf-CCCH	36	1.2e-11	315	341	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++++G Ck+G++C+++H+p XP_027116055.1 315 PGQPECQYYMKYGDCKFGASCRYHHPP 341 5789*********************97 PP
5	zf-CCCH	31.1	4e-10	364	387	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+++ ++G Ck+G++CkF H++ XP_027116055.1 364 AVCSHYIQNGVCKFGPSCKFDHPM 387 78********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MERYSGTQAM EGAATADPVA EWTAPSGETG LEEPMWQLGL GGGPEPYPER PDQADCIYYL 60 RTGLCGYGAR CRFNHPRDRT AAMGARATAG EYPERVGQPV CQFYMRTGNC KFGASCKYHH 120 PRQGSGSQTP VNLNFFGYPL RPGEKDCSYY VKTGQCKYGV TCKYHHPQPA GVQMPAPAPG 180 PGPGPLPAPA TVPVPAIYPP VQSPSVQSSQ QYGVMTGNWP VPRPTILPGS YFPGTYGPML 240 LPPGMVPLPA WTSYPSPVSL AATASNQPAV GAGHIYGITQ LSPSAPAYTG QYLSIPPAAG 300 PSGSSQREHA FPERPGQPEC QYYMKYGDCK FGASCRYHHP PELSAQKSNP VLSPMGLPLR 360 PGAAVCSHYI QNGVCKFGPS CKFDHPMGTL SYSPSASSLA DMPVAPYPVG SSMGTLAPSS 420 SSSDLRPELI SGSSKDAFSS RMSSVSASSG SVGSLFSKSS IVPHSSTQQP GQGTSTSSGS 480 SSTVHGSEVR TSS

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MERYSGTQAM EGAATADPVA EWTAPSGETG LEEPMWQLGL GGGPEPYPER PDQADCIYYL  60
RTGLCGYGAR CRFNHPRDRT AAMGARATAG EYPERVGQPV CQFYMRTGNC KFGASCKYHH  120
PRQGSGSQTP VNLNFFGYPL RPGEKDCSYY VKTGQCKYGV TCKYHHPQPA GVQMPAPAPG  180
PGPGPLPAPA TVPVPAIYPP VQSPSVQSSQ QYGVMTGNWP VPRPTILPGS YFPGTYGPML  240
LPPGMVPLPA WTSYPSPVSL AATASNQPAV GAGHIYGITQ LSPSAPAYTG QYLSIPPAAG  300
PSGSSQREHA FPERPGQPEC QYYMKYGDCK FGASCRYHHP PELSAQKSNP VLSPMGLPLR  360
PGAAVCSHYI QNGVCKFGPS CKFDHPMGTL SYSPSASSLA DMPVAPYPVG SSMGTLAPSS  420
SSSDLRPELI SGSSKDAFSS RMSSVSASSG SVGSLFSKSS IVPHSSTQQP GQGTSTSSGS  480
SSTVHGSEVR TSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-121	C3H family protein