PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027116328.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CPP

Protein Properties

Length: 800aa MW: 87274.8 Da PI: 5.8478

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027116328.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.1	5.5e-16	505	542	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk XP_027116328.1 505 CKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQECFNKP 542 89**********************************96 PP
2	TCR	51.1	2.7e-16	587	625	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN XP_027116328.1 587 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 625 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence
MGEEGERKEV EEVGKKKEVV VMDTPERSKN QINTPISKFE ESPVFSFLNN LSPIQPVKSV 60 HITQTLNALS FSSLPSVFTS PHASSLKESR FLRRHQLVDP SRPEFSSDSE KKIDGNGGIV 120 KYAHNSSEEQ ENFDPGNSLG ETSIEPSYDC SQLAVEFVRS LNYDCKSPIS SPKASCAASN 180 KGLSEFDANA GPLVPFSLVV SGKGLFTNES SIEGLGQTNQ SRDGTGCDWE SLISDAADLL 240 NFDTPKDVDS FNESPRSTTA FYTNNTNNIQ NMQTFGCIEH QGEGMDNENP STQPGEGSCV 300 MEFAEPEEVI TSSSLNSECM EGSLSQKMDA EPVSNLYRGM RRRCLVFEMA GARRKHLEEN 360 SGSVSSILLQ SDGNTPSADK QLVPFKSGND SSRCILPGIG LHLNALATTP KEFKVVKQDA 420 SVAGRLVIAP SSTANFQPIM AGQESFNESL ALTSTETDMD PTENAAPLTE DANQLSALIA 480 NEEFNQISPK KKRRRLEVSG EPEGCKRCNC KKSKCLKLYC ECFAAGVYCV EPCSCQECFN 540 KPIHEDTVLA TRKQIESRNP LAFAPKVIRS SDSLTEDDSS KTPASARHKR GCNCKKSGCL 600 KKYCECYQGG VGCSINCRCE GCKNAFGRKD GSIYIGTEAE LEEDETDALE KTVKDRKPHK 660 TAIQVDVEQQ NPESAPPATP LRFGRPSVQL PFSSKKKPPR SSLPSIGSSS GLYPIQGLAK 720 PNLLHPQPKF DKHFQTVQED ELPEILQGNG SPIGGIKLAS PNSKRVSPPH CDFEMSPGRR 780 SSRKLILQSI PAFPSLTPKH

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence

MGEEGERKEV EEVGKKKEVV VMDTPERSKN QINTPISKFE ESPVFSFLNN LSPIQPVKSV  60
HITQTLNALS FSSLPSVFTS PHASSLKESR FLRRHQLVDP SRPEFSSDSE KKIDGNGGIV  120
KYAHNSSEEQ ENFDPGNSLG ETSIEPSYDC SQLAVEFVRS LNYDCKSPIS SPKASCAASN  180
KGLSEFDANA GPLVPFSLVV SGKGLFTNES SIEGLGQTNQ SRDGTGCDWE SLISDAADLL  240
NFDTPKDVDS FNESPRSTTA FYTNNTNNIQ NMQTFGCIEH QGEGMDNENP STQPGEGSCV  300
MEFAEPEEVI TSSSLNSECM EGSLSQKMDA EPVSNLYRGM RRRCLVFEMA GARRKHLEEN  360
SGSVSSILLQ SDGNTPSADK QLVPFKSGND SSRCILPGIG LHLNALATTP KEFKVVKQDA  420
SVAGRLVIAP SSTANFQPIM AGQESFNESL ALTSTETDMD PTENAAPLTE DANQLSALIA  480
NEEFNQISPK KKRRRLEVSG EPEGCKRCNC KKSKCLKLYC ECFAAGVYCV EPCSCQECFN  540
KPIHEDTVLA TRKQIESRNP LAFAPKVIRS SDSLTEDDSS KTPASARHKR GCNCKKSGCL  600
KKYCECYQGG VGCSINCRCE GCKNAFGRKD GSIYIGTEAE LEEDETDALE KTVKDRKPHK  660
TAIQVDVEQQ NPESAPPATP LRFGRPSVQL PFSSKKKPPR SSLPSIGSSS GLYPIQGLAK  720
PNLLHPQPKF DKHFQTVQED ELPEILQGNG SPIGGIKLAS PNSKRVSPPH CDFEMSPGRR  780
SSRKLILQSI PAFPSLTPKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	489	496	PKKKRRRL
2	490	495	KKKRRR
3	492	496	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-158	CPP family protein