PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027116923.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 428aa MW: 46363.4 Da PI: 8.5806

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027116923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.7	8.4e-13	76	100	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ XP_027116923.1 76 EPDCQYYLRTGTCKFGASCKFHHPR 100 789********************96 PP
2	zf-CCCH	38.3	2.3e-12	122	146	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ XP_027116923.1 122 EKECSYYLKTGQCKFGNTCKFHHPQ 146 689********************97 PP
3	zf-CCCH	37.7	3.3e-12	271	297	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++r+G Ck+G++C+F+H+p XP_027116923.1 271 PGQPECQYYMRYGDCKFGPSCRFHHPP 297 5789*********************97 PP
4	zf-CCCH	26.4	1.2e-08	319	343	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+f+++ G+Ck+G +CkF H++ XP_027116923.1 319 MQSCPFYLQKGHCKFGRNCKFDHPM 343 567********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MELYGRSNAR KGLQQNRSRE WAPAAREAES TGRLGLWDGE AYPERPGMLE CAYYMRTGVG 60 GSVSLAAADY PERVGEPDCQ YYLRTGTCKF GASCKFHHPR NAGGSLISVS LNIYGYPLRL 120 GEKECSYYLK TGQCKFGNTC KFHHPQPAGM SMPATAHPFY PTVQSPSALS EQYCCASTNY 180 RVSRPPILTG SYVPGAYGPF LLHTGVVPVP NWGPYTGPIT PGFSPGTQAS VGATSLYGVS 240 QLNSSATAFA GTYPTLLSDS NQKKQKFPER PGQPECQYYM RYGDCKFGPS CRFHHPPNLV 300 VAKAYSALSP LGLPLRPGMQ SCPFYLQKGH CKFGRNCKFD HPMGTVEYSP SASSLTDVPV 360 TPYMLCSSTA MEGQAAEFVG SKLDLQITRD RPHGSSLSGS VGLTFSRTAP FLLSNIQISD 420 QGSGPNAD

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MELYGRSNAR KGLQQNRSRE WAPAAREAES TGRLGLWDGE AYPERPGMLE CAYYMRTGVG  60
GSVSLAAADY PERVGEPDCQ YYLRTGTCKF GASCKFHHPR NAGGSLISVS LNIYGYPLRL  120
GEKECSYYLK TGQCKFGNTC KFHHPQPAGM SMPATAHPFY PTVQSPSALS EQYCCASTNY  180
RVSRPPILTG SYVPGAYGPF LLHTGVVPVP NWGPYTGPIT PGFSPGTQAS VGATSLYGVS  240
QLNSSATAFA GTYPTLLSDS NQKKQKFPER PGQPECQYYM RYGDCKFGPS CRFHHPPNLV  300
VAKAYSALSP LGLPLRPGMQ SCPFYLQKGH CKFGRNCKFD HPMGTVEYSP SASSLTDVPV  360
TPYMLCSSTA MEGQAAEFVG SKLDLQITRD RPHGSSLSGS VGLTFSRTAP FLLSNIQISD  420
QGSGPNAD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-152	C3H family protein