PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027118104.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRAS

Protein Properties

Length: 220aa MW: 24294.9 Da PI: 5.0958

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027118104.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	103.6	2.9e-32	58	216	4	160
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl.fsev...sPilkf 93 lL ++A +s++++ a++lL+ ++ as +g+p+qR++ yf+eAL+++++ ++ e+ + p + ++ +++e++ +l+ + e+ P+ ++ XP_027118104.1 58 LLQAAAFNFSNQQFVHARNLLNICQDSASLNGNPIQRVVYYFVEALQEKITMeTGGEVLQEKPEGNRRDLTVEEAFLSLHPaLMEChakLPFCRI 152 344555567888888**********************************944445554444444443333333333322565552237* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeelee 160 +++ta qaIl+ v +++r+H iD++i+ G+QW L+qaLa+R e p l+iT+vg+ ske++ee XP_027118104.1 153 TQFTAIQAILDNVGSAKRIHLIDLGIKCGTQWSVLMQALANRHECPLeLLKITAVGP----SKEMIEE 216 ***************************************6665499****9....5555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MPEQSPTSEP SNISCSLSLE LSTVDIIKMA KKIGSGDLSY VKSAASPENY KDFELALLLQ 60 AAAFNFSNQQ FVHARNLLNI CQDSASLNGN PIQRVVYYFV EALQEKITME TGGEVLQEKP 120 EGNRRDLTVE EAFLSLHPAL MECHAKLPFC RITQFTAIQA ILDNVGSAKR IHLIDLGIKC 180 GTQWSVLMQA LANRHECPLE LLKITAVGPS KEMIEEIVSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-15	GRAS family protein