PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027118133.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 597aa    MW: 66655.7 Da    PI: 6.0565
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027118133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2807.2e-862245941373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl.fsevsPilk 92 
                     lv+ Ll++Ae v ++++++a +lL++ ++ +  +g+p+qRl++yf  AL++r+ r++ +  ++ + +  +++      +++++ l f+++ P+  
  XP_027118133.1 224 LVQHLLAAAEKVGEKQFHRAGKLLKECKKPSFDKGNPVQRLVHYFSGALHERIDRETGRSRSQGTGRMLTKYVenALATINSTVLaFQKAVPFSY 318
                     6899***************************************************5555555444444443332244444444447********* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +s+++  qaI e ve +++vHiiD+++  G+Q+  L+qaLa+ +e p  +l+iT+v+    + +e++e+tg+rL +fAe++ +p++f++++ +++
  XP_027118133.1 319 VSQFAGIQAIIEQVEDARKVHIIDLQVRLGTQYTMLIQALAAGSECPVeHLKITAVAT---SCREAIEATGRRLVSFAESFSLPLSFSIVMLDDI 410
                     *****************************************99965545********9...69******************************** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      dl+ + ++++ +Ea+aV + +  + +  ++  les    ++ ++++l+P+v+v++e ea+hn++ F++rf+eal yy a+fd++e  l  ++ +
  XP_027118133.1 411 LDLHGNVFELDDEEAVAVYSEYFFMMMIGSPDRLES----LMGVIRNLNPRVFVITEVEANHNAPVFVNRFTEALFYYGAFFDAFEDCLKDDEAN 501
                     **********************99999988888888....******************************************************* PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     r+++E  ++++ i+n+v++eg+er+ rh + + Wre + ++G+ +v+ls + + qa+lll++++ ++  +++ + ++l+ gWk+ p  s+SaW
  XP_027118133.1 502 RMVLESIYFSKGIKNIVSAEGEERTIRHVKINVWREFFARFGMVEVELSMSSMYQANLLLKNFAcGNSCTLDVDGKALIVGWKGTPTNSLSAW 594
                     ****************************************************************9999************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    
MSYKMFSLEK LDLGGFPDNF APSKGTKVAG EGNAKKRTRT RSLGGENGGE SEEITSLYSG  60
LSFDNQKDNT AEERISSSKY QHELQLQQFV DFGGLDNLYF DVVSPPFQSC SEEIRKLFNT  120
KPGNPEFVES CKEKPHATSL EILKNYGSRL RRLNGEKINI SHFDVASTGI SKKKLSTLAI  180
LLLAGENFIH TSNSTAKSEL STLSHPYASS FLGLSEEDTK DVQLVQHLLA AAEKVGEKQF  240
HRAGKLLKEC KKPSFDKGNP VQRLVHYFSG ALHERIDRET GRSRSQGTGR MLTKYVENAL  300
ATINSTVLAF QKAVPFSYVS QFAGIQAIIE QVEDARKVHI IDLQVRLGTQ YTMLIQALAA  360
GSECPVEHLK ITAVATSCRE AIEATGRRLV SFAESFSLPL SFSIVMLDDI LDLHGNVFEL  420
DDEEAVAVYS EYFFMMMIGS PDRLESLMGV IRNLNPRVFV ITEVEANHNA PVFVNRFTEA  480
LFYYGAFFDA FEDCLKDDEA NRMVLESIYF SKGIKNIVSA EGEERTIRHV KINVWREFFA  540
RFGMVEVELS MSSMYQANLL LKNFACGNSC TLDVDGKALI VGWKGTPTNS LSAWIFE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.16e-51GRAS family protein