PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027118134.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 493aa    MW: 55552 Da    PI: 6.0403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027118134.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS248.23.2e-761204884374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl......fsevsPil 91 
                      Ll++Ae v+++++  a++lL+  +  +s++g+p+qR+a yf+ AL++++ +++  +++   +  ++ ++++++++    l       ++  P+ 
  XP_027118134.1 120 RLLAAAEKVAKQQFVYARKLLSLCESSVSQSGNPIQRVAYYFADALQEKIDKEWGLVSSEEmERIRKGPTDVEQTMIR--LrpemtrCQQEIPFC 212
                     599*************************************************99887765423333333333332222..223456699999*** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                       +++ta q Il+ v++++rvH iDf+i +G +W  ++qa++ R e p  +l+iT+vg+    sk+++e tg+ L++fAe++ +pf+f++ ++++
  XP_027118134.1 213 LYTQFTAIQSILDCVASAKRVHLIDFGIDNGSHWTLIMQAFSVRFECPLeHLKITAVGA----SKQMMEDTGKWLSSFAETISLPFSFSI-IVSE 302
                     ********************************************965544*********....9*************************9.7999 PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     +edl+  ++ ++ +++laV l l+l +ll    + +++ d+++kl+++l+P+++vv e ea+ ns++Fl+rf e+++++sa+fd++++ + +   
  XP_027118134.1 303 MEDLKEGRFGLEADDTLAVYLGLRLWTLL----PWPNQLDKFIKLIRNLNPRLIVVNEMEASINSPDFLKRFNESIHVFSAIFDCINSCMYHRVM 393
                     ****************************9....77777788*********************************************99999999* PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r+  E++++   i+n+v +eg e ++r e+ + Wr+ ++++G  +  +s    +q  l lr  +     +ve + ++l+lgWk+ ++ svSaW+
  XP_027118134.1 394 FRKLNEEVIFPGMIRNIVIAEGIEWIQRYEKISFWRALFGKFGIVETGMSRPPPDQEILFLRSSDrLTSCTVELDGKCLLLGWKGSAIQSVSAWK 488
                     *****************************************************************8889*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    
MDSGPANVSN SQTISYVADT EREIPQIPLN PLELLNQYAP KVKRLRVEDS SEKKSDPPPN  60
PASSGHGQAI PAASIIKMAK ARLLQLNSQK ADIVSYASTS FGAQCGLPSA AAEDFELALR  120
LLAAAEKVAK QQFVYARKLL SLCESSVSQS GNPIQRVAYY FADALQEKID KEWGLVSSEE  180
MERIRKGPTD VEQTMIRLRP EMTRCQQEIP FCLYTQFTAI QSILDCVASA KRVHLIDFGI  240
DNGSHWTLIM QAFSVRFECP LEHLKITAVG ASKQMMEDTG KWLSSFAETI SLPFSFSIIV  300
SEMEDLKEGR FGLEADDTLA VYLGLRLWTL LPWPNQLDKF IKLIRNLNPR LIVVNEMEAS  360
INSPDFLKRF NESIHVFSAI FDCINSCMYH RVMFRKLNEE VIFPGMIRNI VIAEGIEWIQ  420
RYEKISFWRA LFGKFGIVET GMSRPPPDQE ILFLRSSDRL TSCTVELDGK CLLLGWKGSA  480
IQSVSAWKIK QDD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-42GRAS family protein