PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027118337.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 438aa MW: 48085.3 Da PI: 4.8224

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027118337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l ++++ G g+W++ ++ g+ R++k+c++rw +yl XP_027118337.1 14 RGRWTAEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	57.7	2.6e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+el++++++ lG++ W++Ia +m+ gRt++++k++w+++l XP_027118337.1 67 RGNITAEEEELIINLHASLGNR-WSLIAGHMP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MGRAPCCEKV GIKRGRWTAE EDEILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRSDLKRGNI TAEEEELIIN LHASLGNRWS LIAGHMPGRT DNEIKNYWNS HLSRQLHKFK 120 KPDSESSVPP GPLQPAAEVM DLVVEHGGGE VSKKRKGSRT NGSNVRKNRR STNPSQPKEL 180 AGPAAATVQM PRTPTLEEEN LSSAVSLEEG GTSKFVVSSS LMTDACPKRE RRQNLASTGT 240 TSDECTPEVG ETKSSVMLQP EGGLMTSGSD GAVGLDSGML CLDEMMNIGD PDGILTFHGN 300 TSTKETCSET AATNVERRCD NMDPGCYTTR ASSIVDDQEE TDKLGKMDVS KGRNQIGCTS 360 PAHEDHHDGK LDDWDDWQWD EPVVQNNLTT LPGEEADLLS WLWDSDNNNN YLNSSGNFDD 420 GAGMDDEKHN AMVAWLLS

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MGRAPCCEKV GIKRGRWTAE EDEILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGNI TAEEEELIIN LHASLGNRWS LIAGHMPGRT DNEIKNYWNS HLSRQLHKFK  120
KPDSESSVPP GPLQPAAEVM DLVVEHGGGE VSKKRKGSRT NGSNVRKNRR STNPSQPKEL  180
AGPAAATVQM PRTPTLEEEN LSSAVSLEEG GTSKFVVSSS LMTDACPKRE RRQNLASTGT  240
TSDECTPEVG ETKSSVMLQP EGGLMTSGSD GAVGLDSGML CLDEMMNIGD PDGILTFHGN  300
TSTKETCSET AATNVERRCD NMDPGCYTTR ASSIVDDQEE TDKLGKMDVS KGRNQIGCTS  360
PAHEDHHDGK LDDWDDWQWD EPVVQNNLTT LPGEEADLLS WLWDSDNNNN YLNSSGNFDD  420
GAGMDDEKHN AMVAWLLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	6e-76	MYB family protein