PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027118821.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 346aa MW: 39186.4 Da PI: 7.5627

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027118821.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	2.9e-18	44	91	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl XP_027118821.1 44 RGPWTVEEDFTLINYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 91 89********************************************97 PP
2	Myb_DNA-binding	51.1	3e-16	97	140	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_027118821.1 97 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 140 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MDHVKGGGRV CNQQQLQQQQ QISASSTTIA DQEDMMMMMM DLRRGPWTVE EDFTLINYIA 60 HHGEGRWNSL ARCAGLKRTG KSCRLRWLNY LRPDVRRGNI TLEEQLLILE LHSRWGNRWS 120 KIAQHLPGRT DNEIKNYWRT RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAAAAA 180 GANSSTAARA TAATATTTSN SNYHQGNTSM VADVGSGGQV ILPQASTYGG RVTMNPSRST 240 SYTPENSSTP ASSDSFTAQF SPVSDLTDCY NYPVKQSNNQ DYYQANNQLS YGETLTSPTG 300 YFNQALDFHL MEQNNAWMDG GDVSDNLWND EDAWFFQQQL NSNTFN

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MDHVKGGGRV CNQQQLQQQQ QISASSTTIA DQEDMMMMMM DLRRGPWTVE EDFTLINYIA  60
HHGEGRWNSL ARCAGLKRTG KSCRLRWLNY LRPDVRRGNI TLEEQLLILE LHSRWGNRWS  120
KIAQHLPGRT DNEIKNYWRT RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAAAAA  180
GANSSTAARA TAATATTTSN SNYHQGNTSM VADVGSGGQV ILPQASTYGG RVTMNPSRST  240
SYTPENSSTP ASSDSFTAQF SPVSDLTDCY NYPVKQSNNQ DYYQANNQLS YGETLTSPTG  300
YFNQALDFHL MEQNNAWMDG GDVSDNLWND EDAWFFQQQL NSNTFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	1e-88	MYB family protein