PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027119771.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 534aa MW: 58058.3 Da PI: 8.0701

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027119771.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.6	1.6e-11	170	194	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCkyGd+CkF H+ XP_027119771.1 170 GEKDCAYYMLTRTCKYGDSCKFDHP 194 7889********************8 PP
2	zf-CCCH	36.9	6e-12	221	246	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++t Ck+G rCkF+H+ XP_027119771.1 221 PGEPDCPFFMKTQRCKFGTRCKFNHP 246 5789*********************8 PP
3	zf-CCCH	39.4	1e-12	269	293	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ XP_027119771.1 269 EPPCAFYMKTGQCKFGATCKFHHPK 293 79*********************96 PP
4	zf-CCCH	34.2	4.4e-11	345	368	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG +C+++H+ XP_027119771.1 345 EVDCPFYLKTGSCKYGQTCRYNHP 368 689********************9 PP
5	zf-CCCH	36.6	7.4e-12	419	443	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG Ck+G rCkF+H+ XP_027119771.1 419 GETACDFYMKTGDCKFGQRCKFHHP 443 6789********************8 PP
6	zf-CCCH	36.5	7.9e-12	477	498	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++C+F H+p XP_027119771.1 477 CPYYMKTGTCKYGATCRFDHPP 498 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MANQMYRFNF SSNYGGGGEA AAANLYNTNS SRSMVADSFL SSSDTSSLLG SSRYLTSSDP 60 LFSSSAARLF SHSDSYSFRI PGLDAVSPTT TSKPASSSSS WPGPPGVDIA DPFILATLKR 120 SSSQALYHQT VFGAHNPIGQ TEAWFSTNPL AKRPRFESAG NLPIYPQRPG EKDCAYYMLT 180 RTCKYGDSCK FDHPIWVPEG GIPDWKEVPL VDTSEPLPER PGEPDCPFFM KTQRCKFGTR 240 CKFNHPIEKI TPLVALETNS AVLPERPSEP PCAFYMKTGQ CKFGATCKFH HPKDLQISTA 300 GQENSFGEQS KLSTNETSGD FKAVKPPVTP AMMHNTKGLP IRLGEVDCPF YLKTGSCKYG 360 QTCRYNHPDR NGAAYIASPA PNLSIGIVNP AASILQTFDP RLTQTTVGLA AAIYPQRPGE 420 TACDFYMKTG DCKFGQRCKF HHPIDRSAPI ISGKETQQEN VKLTRAGLPR REGAIHCPYY 480 MKTGTCKYGA TCRFDHPPPG EVLAMGTTAQ GTWSPTGGEA EEGSSGPETG GEKQ

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MANQMYRFNF SSNYGGGGEA AAANLYNTNS SRSMVADSFL SSSDTSSLLG SSRYLTSSDP  60
LFSSSAARLF SHSDSYSFRI PGLDAVSPTT TSKPASSSSS WPGPPGVDIA DPFILATLKR  120
SSSQALYHQT VFGAHNPIGQ TEAWFSTNPL AKRPRFESAG NLPIYPQRPG EKDCAYYMLT  180
RTCKYGDSCK FDHPIWVPEG GIPDWKEVPL VDTSEPLPER PGEPDCPFFM KTQRCKFGTR  240
CKFNHPIEKI TPLVALETNS AVLPERPSEP PCAFYMKTGQ CKFGATCKFH HPKDLQISTA  300
GQENSFGEQS KLSTNETSGD FKAVKPPVTP AMMHNTKGLP IRLGEVDCPF YLKTGSCKYG  360
QTCRYNHPDR NGAAYIASPA PNLSIGIVNP AASILQTFDP RLTQTTVGLA AAIYPQRPGE  420
TACDFYMKTG DCKFGQRCKF HHPIDRSAPI ISGKETQQEN VKLTRAGLPR REGAIHCPYY  480
MKTGTCKYGA TCRFDHPPPG EVLAMGTTAQ GTWSPTGGEA EEGSSGPETG GEKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-179	C3H family protein