PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027119799.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 316aa    MW: 34179.5 Da    PI: 4.3318
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027119799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-0911382248
                     T..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 22 g..tWktIartmgkgRtlkqcksrwqkyl 48
                        +W++Ia++++ gRt++++k++w+++l
   XP_027119799.1 11 MrrRWSLIASKLP-GRTDNEVKNYWNSHL 38
                     3447*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MRVLVLLHGA MRRRWSLIAS KLPGRTDNEV KNYWNSHLSR KIYSFRSSDG SSVTTLDMVN  60
MPSKSKRKGG RVSRAVAKKY SMHPITKAPP ITTTTNETSS SSKISSTSGI QEATTAAQNA  120
LVGMVEATTH GVPESTAAAE KVSDDAAVGA VEESGKYQLQ PMANNNYDYD ESEGGCINSM  180
HDIRCGDGGE GCARALLVPS PEKLEGEKGV AGPNDELDDV TLLLESVLES DLMDLSEISV  240
HTGDTENESM YPESASINKD SDSGASNSNS DTGDGLYDCF APLDSYFNHT WDAEYAVPGF  300
GLWDQEDDDV LWPWES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.14e-19MYB family protein