PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027120394.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 398aa MW: 46447.8 Da PI: 6.8936

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027120394.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35	4.8e-11	63	105	48	90
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++k+ +r +tr gCka + v++++++kw +++l+leHnH la XP_027120394.1 63 HNKADMPRDKTRQGCKALVYVSQKEEDKWIIARLVLEHNHVLA 105 45667789********************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MERELGTECP MEQDQVDHDA AHGSMPEDST NEQIEPRKEV NLYVGMEFES LGDAFKCYSN 60 YAHNKADMPR DKTRQGCKAL VYVSQKEEDK WIIARLVLEH NHVLASPYSK KFLRLKRKKS 120 EAQKNLIDML DQSGVRPSKI VSVLATQVGG IGNLNFTDHD VCNYLSTKRH KELEKGDAQL 180 MLQYFQKRQF ENPGFFYAIQ VDIEGRLANC FWTDAKSRSL YKHFGDVVTF DPTYLTNKYK 240 MPFVPLTRVN HHYQSILFGG ALVWDETEES FVWLLQTWLE AMFGCPPKTV ITDQDTAITN 300 AVARVLPHST HHFCMWHIEK KFPETLSHIY HQNNDFKYHF SKCIHDTITP EEFEMAWTEL 360 IEKYKLQNNT WIQKVYSIRE RWVPAFVRAS FCVGMSTT

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MERELGTECP MEQDQVDHDA AHGSMPEDST NEQIEPRKEV NLYVGMEFES LGDAFKCYSN  60
YAHNKADMPR DKTRQGCKAL VYVSQKEEDK WIIARLVLEH NHVLASPYSK KFLRLKRKKS  120
EAQKNLIDML DQSGVRPSKI VSVLATQVGG IGNLNFTDHD VCNYLSTKRH KELEKGDAQL  180
MLQYFQKRQF ENPGFFYAIQ VDIEGRLANC FWTDAKSRSL YKHFGDVVTF DPTYLTNKYK  240
MPFVPLTRVN HHYQSILFGG ALVWDETEES FVWLLQTWLE AMFGCPPKTV ITDQDTAITN  300
AVARVLPHST HHFCMWHIEK KFPETLSHIY HQNNDFKYHF SKCIHDTITP EEFEMAWTEL  360
IEKYKLQNNT WIQKVYSIRE RWVPAFVRAS FCVGMSTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-95	FAR1 family protein