PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027120398.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 264aa    MW: 30295.6 Da    PI: 8.6366
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027120398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.43.7e-2121108189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                     +fYn+Y+  vGFsvrk++ +k  ++g +t+r+++C keg+++  +++ +k +rtraet++gC+ak+ + +++ + k++v +l+ e nH++
  XP_027120398.1  21 NFYNRYGLVVGFSVRKDYLNKD-KDGVVTSRRYTCCKEGFKRWYERD-VKPKRTRAETKIGCEAKIGIILNReTMKYQVRDLVIEYNHTI 108
                     6*****************9998.8999****************9999.9*******************999989**************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MEETLCPKIG MEFQSEDEAY NFYNRYGLVV GFSVRKDYLN KDKDGVVTSR RYTCCKEGFK  60
RWYERDVKPK RTRAETKIGC EAKIGIILNR ETMKYQVRDL VIEYNHTIHI SECAHMMRSQ  120
RKVSISQGAQ AEIANDAGIS LKQSHELIGK EVGGLGNIGY TRDDLKRYLR CESNFRSSSV  180
IHSDMQSCRM PGEPRITPQI LTAHNIHIQD RNNLPLLIPN DLVNKTKYSS FTEFLMTPIV  240
ASVERLQSST PIHISDEKVQ VPTI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-22FAR1 family protein