PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027120674.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 481aa MW: 52455.9 Da PI: 8.4816

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027120674.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.7e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H XP_027120674.1 77 YICEVCHKGFQRDQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	13.1	0.00028	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + XP_027120674.1 153 WKCDKCSKRYAVQSDWKAHTKIC 175 58*****************9987 PP
3	zf-C2H2	10.9	0.0015	183	201	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + XP_027120674.1 183 DCGTIFSRKDTFVTHRAFC 201 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MSKYVVQDFE EEDEQLPGTV ITQSSNDSPN PLDNGADQPT QNIATTSKKK RNLPGNPDPD 60 AEVVALSPRT LMATNRYICE VCHKGFQRDQ NLQLHRRGHN LPWKLKQRPT TQVKKRVYVC 120 PEPSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HTKICGTREY 180 RCDCGTIFSR KDTFVTHRAF CDALIEENNK MNQTLAAATG GMLQHQAQEL FPSPLPVPDP 240 TNPMMNLSIS HANMDTSVLK PLSLNAQGLL AVSSNVDPIF SPNGANPRTS FSTLGGHNGN 300 SHLPIGSAFS SATALLQKAA EMGAKISDNS MAPILLRGFS GYSTSNMNTS NSIQEGSSAV 360 GGQTSGGVPN SLYMRNLDAY GKSTEAGIQR INSFSSSQSG GLYDPNTLLM HSSNGTSGIL 420 SDRDHVLMGG SERLTLDFLG VEPAAAAAQS SFAKKRRLEG DVMGLDYSKA QQNLHHLHSD 480 W

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MSKYVVQDFE EEDEQLPGTV ITQSSNDSPN PLDNGADQPT QNIATTSKKK RNLPGNPDPD  60
AEVVALSPRT LMATNRYICE VCHKGFQRDQ NLQLHRRGHN LPWKLKQRPT TQVKKRVYVC  120
PEPSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HTKICGTREY  180
RCDCGTIFSR KDTFVTHRAF CDALIEENNK MNQTLAAATG GMLQHQAQEL FPSPLPVPDP  240
TNPMMNLSIS HANMDTSVLK PLSLNAQGLL AVSSNVDPIF SPNGANPRTS FSTLGGHNGN  300
SHLPIGSAFS SATALLQKAA EMGAKISDNS MAPILLRGFS GYSTSNMNTS NSIQEGSSAV  360
GGQTSGGVPN SLYMRNLDAY GKSTEAGIQR INSFSSSQSG GLYDPNTLLM HSSNGTSGIL  420
SDRDHVLMGG SERLTLDFLG VEPAAAAAQS SFAKKRRLEG DVMGLDYSKA QQNLHHLHSD  480
W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-110	C2H2 family protein