PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027121075.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 340aa MW: 38426.5 Da PI: 7.2171

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027121075.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.7	2.8e-18	38	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl XP_027121075.1 38 RGPWTVEEDFTLINYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 85 89********************************************97 PP
2	Myb_DNA-binding	51.2	3e-16	91	134	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_027121075.1 91 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 134 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MDHVKGGGRV CNQQQQISAS STTIADQEDM MMIMDLRRGP WTVEEDFTLI NYIAHHGEGR 60 WNSLARCAGL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG NRWSKIAQHL 120 PGRTDNEIKN YWRTRVQKHA KQLKCDVNSK QFKDTMRYLW MPRLVERIQA AAAAGADSST 180 AARATAATAT TTSNSNYHQG NTSMVADVGS AGQVILPQAS TYGGRVTMNP SRSTSYTPEN 240 SSTPASSDSF TAQFSPVSDL TDCYNYPVKQ SNNQDYYQAN NQLSYGETLT SPTGYFNQAL 300 DFHLMEQNNA WMDGGDVSDN LWNDEDAWFF QQQLNSNTFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	2e-89	MYB family protein