PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027121343.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ERF
Protein Properties Length: 270aa    MW: 30155.8 Da    PI: 9.6233
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027121343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-1771119355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + GVr+++ +grWvAeI+d s   ++ r +lg+f+taeeAa a+++a++ l+g
  XP_027121343.1  71 FLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDTAEEAALAYDNAARLLRG 119
                     67******.7*********42...36***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MINQQILKPI SMDGSMDAQS SKVQSQSQDP FRSLPLLPMM ATATPPESIE VQVDMESPRR  60
GNITIHGRRR FLGVRQRPSG RWVAEIKDSS QKLRLWLGTF DTAEEAALAY DNAARLLRGR  120
NAKTNFTYNG TMDTREENLS LLGKNPRLYQ LLKHAITKNL AKSSALDSSK STRNFTDQSV  180
VEGESSPVDH VVTTVEDNII GNEDHDQSQE KRELRRISLG SSKVYSSVIV APSFSASLSQ  240
GREEPENNSR GALFNSLFYQ TNVMSHNKLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-16ERF family protein