PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027121485.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WOX

Protein Properties

Length: 246aa MW: 28256.9 Da PI: 5.3864

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027121485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	70.1	2.6e-22	81	142	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 rr+R+++t++ql++Le++F + n +ps+e+ ++++++l +++e++V++WFqNrRa++kk XP_027121485.1 81 RRQRWNPTAQQLQILERVFDQgNETPSKEKVKDITAELakhgQISESNVYNWFQNRRARMKK 142 89****************99*************************************8 PP
2	Wus_type_Homeobox	95.8	3.7e-31	81	144	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RW+Pt++Q++iLe+++++G tP+ke++++itaeL+++G+i++ NV++WFQNr+aR ++kq XP_027121485.1 81 RRQRWNPTAQQLQILERVFDQGNETPSKEKVKDITAELAKHGQISESNVYNWFQNRRARMKKKQ 144 589***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MEGQNIHGGN LNNGDDMFVK VMTDEQMEIL GKQIAAYATI CEQLEDLHRA LISQNDPSHF 60 MLRNPYLTPL MTTSSLHRIP RRQRWNPTAQ QLQILERVFD QGNETPSKEK VKDITAELAK 120 HGQISESNVY NWFQNRRARM KKKQVVVENK KTEPETQMVT ESSLEEGEKL KPSEPMIEGQ 180 NYCVQKVSAG NSIFSFDEQG MEMQQPLFAI EGFHRGMSPD KAKIHYLLED MDVNPPGCYD 240 PYIHAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	144	RRARMKKKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-50	WOX family protein