PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027121642.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 212aa    MW: 24454.7 Da    PI: 10.1033
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027121642.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.21e-2144128290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +Y+eYA ++GF +r+ +s+ks+r+g+i++r + C    ++++ k     ++++r+  r gC+a++ +k+ek g+w+v k++ +HnH+l+
  XP_027121642.1  44 YYDEYALRTGFVTRVLSSRKSERDGSIISRGLGCRGIYSHNSAK----VSSQKRNRRREGCTAMMLIKREKPGRWVVRKFVRDHNHPLV 128
                     8*********************************7554444444....457888899******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MLVDDGTRRL QTSGCGETSL CEVEQGQEPY EDMLFESEGA ARAYYDEYAL RTGFVTRVLS  60
SRKSERDGSI ISRGLGCRGI YSHNSAKVSS QKRNRRREGC TAMMLIKREK PGRWVVRKFV  120
RDHNHPLVDS LPRRRPTFDE KDKRIQELTA ELRVKKRLSA AYKEQLLSLM KDVENHNEHL  180
STKVQVVRNN LKELEARRQE LVNHNSGTYG KG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.17e-56FAR1 family protein