PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027121956.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 447aa MW: 51515.5 Da PI: 7.227

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027121956.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.2	4.1e-21	86	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ ++g r++vC +eg+r+e+ + ++++r+ +a trtgC a+++vk ++ + k++vt++ eHnH+la XP_027121956.1 86 EFYNLYAKLSGFGIRKSNAKRD-EDGISRFRKWVCCCEGYRNEKWFNyEDRKREAKAITRTGCGACFRVKYDTeSVKYVVTRFIMEHNHPLA 176 6**************98887.8898999********9988767889999*************9899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MGQDGVLKTH DMVQEIEKGK MGMDGYGRLM SFDLNQEPEC DRDTCSEESG GSIGGHEDEE 60 ADELVGAIGV DDVMKLTFDT EEEAGEFYNL YAKLSGFGIR KSNAKRDEDG ISRFRKWVCC 120 CEGYRNEKWF NYEDRKREAK AITRTGCGAC FRVKYDTESV KYVVTRFIME HNHPLASEVS 180 VQHLRSQKKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER 240 RKDIFNGDAE GALGFLAAKK DADDMFFYKY HVDNEGRLAR LFWADSKSRV DFSVFGDVLV 300 FDTTYKTNKY RKPLVVLAGV NNHLNSTIFG CALLSDERIE TYEWVLSTFV EAMKGRKPVA 360 VMTDGDSAMR RAIKNLLPDA CHRLCSWHLH RNARSNIRCE EFNNRLYDLM ARKFSTLEFE 420 DRWARLVNEC GVVENEWVKK LYRRRRL

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MGQDGVLKTH DMVQEIEKGK MGMDGYGRLM SFDLNQEPEC DRDTCSEESG GSIGGHEDEE  60
ADELVGAIGV DDVMKLTFDT EEEAGEFYNL YAKLSGFGIR KSNAKRDEDG ISRFRKWVCC  120
CEGYRNEKWF NYEDRKREAK AITRTGCGAC FRVKYDTESV KYVVTRFIME HNHPLASEVS  180
VQHLRSQKKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER  240
RKDIFNGDAE GALGFLAAKK DADDMFFYKY HVDNEGRLAR LFWADSKSRV DFSVFGDVLV  300
FDTTYKTNKY RKPLVVLAGV NNHLNSTIFG CALLSDERIE TYEWVLSTFV EAMKGRKPVA  360
VMTDGDSAMR RAIKNLLPDA CHRLCSWHLH RNARSNIRCE EFNNRLYDLM ARKFSTLEFE  420
DRWARLVNEC GVVENEWVKK LYRRRRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	442	447	YRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-65	FAR1 family protein