PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122050.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 284aa    MW: 32080.4 Da    PI: 5.4423
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122050.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS43.94e-1411518384151
            GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspe 151
                      ++  P+   ++++  q Ileav  +++vH  Df+i +G QW  +++aLa s + +  +l+iT ++ ++
  XP_027122050.1 115 VQKEVPFCLETQFISSQSILEAVTAAKKVHLMDFEIDNGSQWTLIMEALAvSHECPVEHLKITDIVVSD 183
                     455679999999**************************************66667788*****988744 PP
2GRAS344.1e-11180282182288
            GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                     v+++l+dl+ e  +   +Ea+a+ l+++l +ll+ + +le     ++ ++k+l+P  +v+ e e+   + +Flerf e+l + s l ds+++ + 
  XP_027122050.1 180 VVSDLKDLKEEFYNSVADEAVAIDLAYRLWSLLAWPNHLEA----LMAVIKNLKPSFLVLKEVEVYAKALTFLERFNEKLLFISGLIDSTNSCME 270
                     67788888888888889***************966666666....*********************************************99988 PP

            GRAS 277 reseerikvEre 288
                     ++   r+ vE++
  XP_027122050.1 271 KHILYRKLVEEV 282
                     877888888875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MWYKVERLRN PQKLLEESPD TPNNSCCSQA LLTDKIMKLA KAQLVQLNSK KADVLSSGKG  60
CFKGQCGVSS KVAQDLELAL LVQAAAEKVE DEQLVYARKL LNICDVLASK TCNFVQKEVP  120
FCLETQFISS QSILEAVTAA KKVHLMDFEI DNGSQWTLIM EALAVSHECP VEHLKITDIV  180
VSDLKDLKEE FYNSVADEAV AIDLAYRLWS LLAWPNHLEA LMAVIKNLKP SFLVLKEVEV  240
YAKALTFLER FNEKLLFISG LIDSTNSCME KHILYRKLVE EVHW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-18GRAS family protein