PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027122068.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 360aa MW: 41825.7 Da PI: 7.1273

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027122068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.9	1.3e-14	158	204	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd llv++v+++G + W+ Ia+ + g +kqc++rw+++l XP_027122068.1 158 KGQWTIEEDRLLVHLVEKFGVRKWSHIAQVLK-GXIGKQCRERWHNHL 204 799**************************9.***********97 PP
2	Myb_DNA-binding	57.4	3.4e-18	212	252	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd +l++a+++ G++ W+ Ia++++ gRt++++k++w+ XP_027122068.1 212 IWTEEEDRILIEAHAEIGNK-WAEIAKKLP-GRTENSIKNHWN 252 6*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MEFNTKCSNK PGHQQFSMPA NFLKPDIDQD FCMDNCQSKG FLQDFQHLDH FSFTGSSFNP 60 DLGIHTTGFD PFDPFFNGSS MIDFDYLDFK PFEENDNNNG KLVTQNFEGG DESSCITAES 120 VYYKESGTKR NNNRFSNIAL SSSTKKQGRG RKKSKSAKGQ WTIEEDRLLV HLVEKFGVRK 180 WSHIAQVLKG XIGKQCRERW HNHLRPDIKK DIWTEEEDRI LIEAHAEIGN KWAEIAKKLP 240 GRTENSIKNH WNATKRRQFS RRKCRTKWPK PSSLLQNYIK SLNFEKSNYD FSEVPEFALD 300 DNLFERTSIN NLNAEIHNAS PILDDKGFCM EIPYDVPPPI MQFEVKKELD LMEMISHVNQ

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MEFNTKCSNK PGHQQFSMPA NFLKPDIDQD FCMDNCQSKG FLQDFQHLDH FSFTGSSFNP  60
DLGIHTTGFD PFDPFFNGSS MIDFDYLDFK PFEENDNNNG KLVTQNFEGG DESSCITAES  120
VYYKESGTKR NNNRFSNIAL SSSTKKQGRG RKKSKSAKGQ WTIEEDRLLV HLVEKFGVRK  180
WSHIAQVLKG XIGKQCRERW HNHLRPDIKK DIWTEEEDRI LIEAHAEIGN KWAEIAKKLP  240
GRTENSIKNH WNATKRRQFS RRKCRTKWPK PSSLLQNYIK SLNFEKSNYD FSEVPEFALD  300
DNLFERTSIN NLNAEIHNAS PILDDKGFCM EIPYDVPPPI MQFEVKKELD LMEMISHVNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	4e-74	MYB family protein