PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122085.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family AP2
Protein Properties Length: 108aa    MW: 12171.6 Da    PI: 11.3173
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122085.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.5e-1256102143
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAa 43 
                     s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++  eeA+
  XP_027122085.1  56 SIYRGVTRHRWTGRFEAHLWDkTTWNAiqtKKgRQIYLGAYDN-EEAR 102
                     57*******************666699988557**********.***8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    
MKRPHSSCSP SSSCIELKKS RTTKHASSSS RAKRDKKKSQ ISADASSSPI AARRSSIYRG  60
VTRHRWTGRF EAHLWDKTTW NAIQTKKGRQ IYLGAYDNEE ARSSTVSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-22AP2 family protein