PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027122100.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 443aa MW: 50873.6 Da PI: 7.0677

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027122100.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.8	4.9e-20	86	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rk++ k+ +g r++vC +eg+r+e+ + ++++r+ ++ trtgC a+++vk + + k++vt++ eHnH+la XP_027122100.1 86 EFYNLYAKLSGFGIRKNNAKRD-VDGISRFRKWVCCCEGYRNEKWFNyENRKREAKPITRTGCGACFRVKYDIeSVKYVVTRFIMEHNHSLA 176 6*************998887.8999999********9988767889999************98899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MGQDGALKTH DMLQETENGK IGMDGCGRLR SFDLNQEPEC DRDTFSEKSC GSIRGHEDEE 60 ADELVGAIGV DDVMKFAFDT EEEAGEFYNL YAKLSGFGIR KNNAKRDVDG ISRFRKWVCC 120 CEGYRNEKWF NYENRKREAK PITRTGCGAC FRVKYDIESV KYVVTRFIME HNHSLASEAS 180 VQHIRSHRKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER 240 RKDILNGDAE GALEFLAAKK DADDIFFYKY HVDNEGRLAR LFWADSKSRV DFSVFGDVLV 300 FDTTCKTNKY RKPLVVLAGV NNHLNSTVFG CALLSDERIE TYEWVLSTFV EAMKGRKPVA 360 VMTDGDSTKR RAIKNLLPDA CHRLCSWHLH RNARSNIRCE EFNNRLYNLI ARKCSTLEFE 420 NRWARLVNEY GVVENEWGEE VVL

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MGQDGALKTH DMLQETENGK IGMDGCGRLR SFDLNQEPEC DRDTFSEKSC GSIRGHEDEE  60
ADELVGAIGV DDVMKFAFDT EEEAGEFYNL YAKLSGFGIR KNNAKRDVDG ISRFRKWVCC  120
CEGYRNEKWF NYENRKREAK PITRTGCGAC FRVKYDIESV KYVVTRFIME HNHSLASEAS  180
VQHIRSHRKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER  240
RKDILNGDAE GALEFLAAKK DADDIFFYKY HVDNEGRLAR LFWADSKSRV DFSVFGDVLV  300
FDTTCKTNKY RKPLVVLAGV NNHLNSTVFG CALLSDERIE TYEWVLSTFV EAMKGRKPVA  360
VMTDGDSTKR RAIKNLLPDA CHRLCSWHLH RNARSNIRCE EFNNRLYNLI ARKCSTLEFE  420
NRWARLVNEY GVVENEWGEE VVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-60	FAR1 family protein