PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122114.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 192aa    MW: 21791.9 Da    PI: 9.1002
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003481100120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ykC+ C+k F+++  +  H+
  XP_027122114.1  81 YKCEFCSKKFTNSQAFGGHQ 100
                     9***********99887777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MGQNSAISFL LSPARSCVDY FSCDTPVDNK RLKLFGFEID SCQKSTTAPR SERDESVVHS  60
RTDELPKAAG NPLCSIELQK YKCEFCSKKF TNSQAFGGHQ NAYRKERLMK KAYSFKPKGQ  120
ALMPKFYLFL TSDAVIYHYS PRDLGDLPFC LSVCIVGKSQ IYSFASLNQH QNFDGLHFSH  180
SKALSRHCKF QL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.11e-09C2H2 family protein