PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027122203.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 359aa MW: 41661.7 Da PI: 8.3909

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027122203.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.3	2.3e-22	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++ Fsvrk++ +k ++g +t+r++ C keg +++ + + + +rtra t+tgC ak+++ + + + k++v++l+leHnHel XP_027122203.1 26 KFYNKYAFKMSFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAKMVIVLFRgTMKYHVHDLVLEHNHEL 113 6***************9998.8999************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MDCSKLAEDG TPELGMEFNS EEDAYKFYNK YAFKMSFSVR KDYLNKDKDG VTTSRRYSCC 60 KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IVLFRGTMKY HVHDLVLEHN HELHIAQCSH 120 MMPSQRKVSE AQGFQAEISV DAGLSLKQSH ELMGKEAGGM ENVGYTREDL KRYLRTRRER 180 GLKYGDAGML IDYKFFGDVV TFDTTYKTNK EYRPLGVFVE AMCGKHPSTI LTDQDHAMAA 240 ALSVVMPETF RCLCTFHIRR NFMKHLGNHY KENSDLPYMF GACMYEFEEV EQFNRVWEAM 300 VKKHNLENNE WLSGLYRIHD KWARCMMKER WTAGMRSTQL SESLNAAIKN HLKLDHDLV

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MDCSKLAEDG TPELGMEFNS EEDAYKFYNK YAFKMSFSVR KDYLNKDKDG VTTSRRYSCC  60
KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IVLFRGTMKY HVHDLVLEHN HELHIAQCSH  120
MMPSQRKVSE AQGFQAEISV DAGLSLKQSH ELMGKEAGGM ENVGYTREDL KRYLRTRRER  180
GLKYGDAGML IDYKFFGDVV TFDTTYKTNK EYRPLGVFVE AMCGKHPSTI LTDQDHAMAA  240
ALSVVMPETF RCLCTFHIRR NFMKHLGNHY KENSDLPYMF GACMYEFEEV EQFNRVWEAM  300
VKKHNLENNE WLSGLYRIHD KWARCMMKER WTAGMRSTQL SESLNAAIKN HLKLDHDLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-43	FAR1 family protein