PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027122269.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 215aa MW: 25427.2 Da PI: 9.1307

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027122269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.2	6.3e-19	26	112	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 kfYn+YA ++ Fsv+k++ +k+ +ng +t r++ C keg +++ +++ + +rtra +t+C k+ + +++ + k++v++l+leHnH+ XP_027122269.1 26 KFYNKYAFKMDFSVCKDYLNKN-KNGVTTYRRYSCCKEGVKRKYESD-VMPKRTRALMKTSCGTKMIIVLHRrTMKYCVHDLVLEHNHS 112 6******************9.8888************9999.999***********9999988*************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MDYSKLVEDG TPELGMEFNN EDDVHKFYNK YAFKMDFSVC KDYLNKNKNG VTTYRRYSCC 60 KEGVKRKYES DVMPKRTRAL MKTSCGTKMI IVLHRRTMKY CVHDLVLEHN HSHELTRKEV 120 DGMGNVGYTR DDFKQYLCTR RKRRLKYGET DTGAQPLQPW VKDNIDGPMT RSRFKKVKEA 180 LRALIIHHTS KEQAKFEELM DHEVTLLTCT FEVQE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	178	RRKRRLKYGETDTGAQPLQPWVKDNIDGPMTRSRFKKVK
2	141	179	RRKRRLKYGETDTGAQPLQPWVKDNIDGPMTRSRFKKVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-10	FAR1 family protein