PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122286.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARR-B
Protein Properties Length: 339aa    MW: 38436.8 Da    PI: 9.7403
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122286.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.61.6e-24217271155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+ WtpeLH++F  av+qLG + k +Pk++lelm+ + Lt+ +v+SHLQkYR 
  XP_027122286.1 217 KARVTWTPELHAKFAAAVQQLGQEGKSVPKKVLELMNEPHLTRGNVASHLQKYRK 271
                     68****************************************************6 PP
2Myb_DNA-binding40.75.6e-13219270148
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  WT+e++ +++ av+qlG +    +k++ + m+  ++t+ ++ s++qky+
   XP_027122286.1 219 RVTWTPELHAKFAAAVQQLGQEgksVPKKVLELMNePHLTRGNVASHLQKYR 270
                      679*****************99*****************************7 PP
3Response_reg67.18.2e-23251331109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl +dD+ + +++l+  l+k gy +v++++++ ea+e+l++++  +D++++D++ ++md ++ll+ i  e  ++p+i+ +a+++ e +++ +  G
  XP_027122286.1  25 VLAIDDNVVCLKVLAFELQKCGY-QVTATTKAAEAIEMLRKNKdsYDIVITDVMRSDMDVFKLLEIIGLEM-DIPVIMTSANNDLEVIEKGVMHG 117
                     7899*******************.9**************888889********************996644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a+d+l+Kp+ pe l +
  XP_027122286.1 118 ARDYLVKPVGPEILKN 133
                     *********9997765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MFNAHLASQP SFQQRDNHFS QGLRVLAIDD NVVCLKVLAF ELQKCGYQVT ATTKAAEAIE  60
MLRKNKDSYD IVITDVMRSD MDVFKLLEII GLEMDIPVIM TSANNDLEVI EKGVMHGARD  120
YLVKPVGPEI LKNIWQHVIR KTTYNPLPAQ RIEANRAIRI PAQQIEANMA SRVPAQKMEA  180
DRAIRRSARV LHRKNHTVED GQAVQSHDAP PLLEHKKARV TWTPELHAKF AAAVQQLGQE  240
GKSVPKKVLE LMNEPHLTRG NVASHLQKYR KAALKQKEDA RQEIEYHCDA NMRRHLDDAN  300
IRASSSQNQR FHAVNHSNSS AAYGRYNLRS QNNPSLHDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.11e-65ARR-B family protein