PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122369.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 147aa    MW: 17345.1 Da    PI: 9.7961
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122369.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.82e-1926113189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                     kfYn+YA ++ Fsvrk++ +k  +++ +t+r+++C keg +++ + + +  +rtra t++gC  k+++ + + + k++v++l+l+Hn el
  XP_027122369.1  26 KFYNKYAFQMDFSVRKDYLNKY-KDNVTTSRRYRCCKEGVKRKYEGD-VMPKRTRALTKIGCGDKMVIVLLRrTMKYRVHDLVLKHNREL 113
                     6*******************99.55569***************9999.999************9999888777**************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    
MDCNKLAEDE ITELGMEFNS EKDAYKFYNK YAFQMDFSVR KDYLNKYKDN VTTSRRYRCC  60
KEGVKRKYEG DVMPKRTRAL TKIGCGDKMV IVLLRRTMKY RVHDLVLKHN RELDIAQCSH  120
MMLSQRKASE TQGFQTKISE NTGLSLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.27e-11FAR1 family protein