PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122379.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family TCP
Protein Properties Length: 170aa    MW: 17945.7 Da    PI: 5.5018
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP89.38.4e-2819124120
             TCP  24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskksqksaasalnlakesrak 117
                     ++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+ +  + s +s++s         sa++sk++++s +sal+la++  ++
  XP_027122379.1   1 MPAACAARIFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANIStLNISVRSNGS-------TLSAPPSKSAPHSFHSALALAHHPYEE 88 
                     9**********************************************88844444444444.......333335566666666666666655544 PP

             TCP 118 ara 120
                       +
  XP_027122379.1  89 GFS 91 
                     444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MPAACAARIF QLTRELGHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANIS TLNISVRSNG  60
STLSAPPSKS APHSFHSALA LAHHPYEEGF SHMLGFQQQQ QHLLAANQMT EAIPSGDGGG  120
DSGGGGGQDA TESYLRKRYR EDLFKEEGSS GRQGDGADET SLLLQISNSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-38TCP family protein