PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122559.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 181aa    MW: 20470.9 Da    PI: 10.5486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-081565554
                    HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     + +Er+RR r+N  ++eL +l+ +  + ++++ ls  +   ++  YI +L
  XP_027122559.1 15 RKTVERNRRIRMNGLIHELTSLVLPqHFVPSKEQLSQRDQIDQVAAYIMQL 65
                    5789*******************99788888888**************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MENCSVNDAS RKLDRKTVER NRRIRMNGLI HELTSLVLPQ HFVPSKEQLS QRDQIDQVAA  60
YIMQLKDRVE KLRKTKELVK RKIKTKGSNT GNSAIPGSRI PVVKIREIGS SLEVVLVTGL  120
GKNFGLHEVI IVLEEQGVEV VSISISTMDN RICHILHAQV KVSRLGVDTL TIYDRLQKLI  180
N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-25bHLH family protein