PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122695.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 188aa    MW: 21286.9 Da    PI: 10.5484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122695.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-092272554
                    HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     + +Er+RR r+N  ++eL +l+P+  + ++++ ls  +   ++  YI +L
  XP_027122695.1 22 RKTVERNRRIRMNGLIHELTSLVPPqHFVPSKEQLSQRDQIDQVAAYIMQL 72
                    5789*********************888888888**************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MNCFPRVMEN CSVNDASRKL DRKTVERNRR IRMNGLIHEL TSLVPPQHFV PSKEQLSQRD  60
QIDQVAAYIM QLKDRVEKPR KTKELVKRKI KTKGSNTGNS AIPGSRIPVV KIREIGSSLE  120
VVLVTGLGKN FGLHEVIIVL EEQGVEVVSI SISTMDNRIC HILHAQVKVS RLGVDTLTIY  180
DRLQKLIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-25bHLH family protein