PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027122906.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 476aa MW: 52527.7 Da PI: 6.1687

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027122906.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.7e-16	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I +++g ++t+ q++s+ qk+ XP_027122906.1 55 REKWTEEEHQRFLEALKLYGRA-WRQIEEHVG-TKTAIQIRSHAQKF 99 789***************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MVAEAPDLIE GTSHDVSLGM RAHLETTEAQ TQALTEMGNG YALKVRKPYT IKKQREKWTE 60 EEHQRFLEAL KLYGRAWRQI EEHVGTKTAI QIRSHAQKFF AKVARDSNEC EGSLNPIEIP 120 PPRPKKKPAH PYPRKVTDVT KTTLDDPHQP EQAPPFKRSG EERNSRSPTS VLSALGSDTS 180 GSPSSEPQRS HLSPVSYTTD DAHSAIVQLT ENDNECMTSD SSVEEEKEYG HAILLATSAT 240 QDDESAMELD LLTFGRACPA EDPAFEQAPA TIKLFGRTVE IKENQKLSSS APENSELSPS 300 HSMKEKLDIR NGRHMIGSAE NTIDSQVNLS LVPSCITPVA CLVPQYAVSE DFGQLGSIPH 360 MIPMWTWSHG PLLPNLSLSN QTAIENFGNN PYKGAVKNEE SQREISLTGS NDGLVTAAKR 420 GQKIFNAIQS KNLGNVERQR STKGFVPYKR CLAERDATSS LVAAEEREGQ RARICS

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MVAEAPDLIE GTSHDVSLGM RAHLETTEAQ TQALTEMGNG YALKVRKPYT IKKQREKWTE  60
EEHQRFLEAL KLYGRAWRQI EEHVGTKTAI QIRSHAQKFF AKVARDSNEC EGSLNPIEIP  120
PPRPKKKPAH PYPRKVTDVT KTTLDDPHQP EQAPPFKRSG EERNSRSPTS VLSALGSDTS  180
GSPSSEPQRS HLSPVSYTTD DAHSAIVQLT ENDNECMTSD SSVEEEKEYG HAILLATSAT  240
QDDESAMELD LLTFGRACPA EDPAFEQAPA TIKLFGRTVE IKENQKLSSS APENSELSPS  300
HSMKEKLDIR NGRHMIGSAE NTIDSQVNLS LVPSCITPVA CLVPQYAVSE DFGQLGSIPH  360
MIPMWTWSHG PLLPNLSLSN QTAIENFGNN PYKGAVKNEE SQREISLTGS NDGLVTAAKR  420
GQKIFNAIQS KNLGNVERQR STKGFVPYKR CLAERDATSS LVAAEEREGQ RARICS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	4e-39	MYB_related family protein