PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027122965.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 649aa MW: 74559.8 Da PI: 8.3182

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027122965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60	7.4e-19	26	108	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++GFsvrk+k +g it+r++ C keg +++ + + + +r ra t+tgC ak+++ + + k +v++l+leHnH l XP_027122965.1 26 KFYNKYAFKMGFSVRKDK------DGVITSRRYSCCKEGVKRKYEGD-VMPKRIRAATKTGCGAKMVIVLFRgIMKHRVHDLVLEHNHGL 108 6***********9985......799************9999.99999*************9989************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MDCSKLAEDG TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KDKDGVITSR RYSCCKEGVK 60 RKYEGDVMPK RIRAATKTGC GAKMVIVLFR GIMKHRVHDL VLEHNHGLHI AQCAHMMPSQ 120 RKVSEAQGFQ AEISEDAGLS LKQSHELMGK EAGGMENVGY TREDLKRYLR TRRERSLKYG 180 EIEAMCGKRP STILTDQDHA MTAALSVVML ETFHGLCTFH IRRNFMKHLG NHYKENSDLP 240 YMFGACMYEF GEVEQFNRVW EAMVKKHNLE NNEWLSALYR IHAKWARCMM KERWTVGMRS 300 THLSESPNAT IKNHLKLDHD LVQLFRHFNR VVDEKRHNEL IAEYEMRQKL PMVGLKQTPM 360 LVHASETYSP TVFVAFQNEY GESTTIVILR QQDAAMIVEF AVMRYDGGSK RIVVFNRNDL 420 SVRCSCKKYE NEGILCGHAL KVFDTMGIKI IPPEYIKRRW TKRARAGDCF DWRRREIVAD 480 PKIMISTRYR ELAPAMIKVA TRAAMSEDTS KVAITVISDL AKRVELLLSE SEEQPLQNKK 540 NLNMEERDKI EIVNEMGEAV VVSDSEPTSV SFEEYMFMGC RSSTDSVSMH SMSQTVNGPP 600 NAIAPDIDES ETVHRLANQG PPTSVLTELM HLKFSIFSKH NFVRDVLMV

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MDCSKLAEDG TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KDKDGVITSR RYSCCKEGVK  60
RKYEGDVMPK RIRAATKTGC GAKMVIVLFR GIMKHRVHDL VLEHNHGLHI AQCAHMMPSQ  120
RKVSEAQGFQ AEISEDAGLS LKQSHELMGK EAGGMENVGY TREDLKRYLR TRRERSLKYG  180
EIEAMCGKRP STILTDQDHA MTAALSVVML ETFHGLCTFH IRRNFMKHLG NHYKENSDLP  240
YMFGACMYEF GEVEQFNRVW EAMVKKHNLE NNEWLSALYR IHAKWARCMM KERWTVGMRS  300
THLSESPNAT IKNHLKLDHD LVQLFRHFNR VVDEKRHNEL IAEYEMRQKL PMVGLKQTPM  360
LVHASETYSP TVFVAFQNEY GESTTIVILR QQDAAMIVEF AVMRYDGGSK RIVVFNRNDL  420
SVRCSCKKYE NEGILCGHAL KVFDTMGIKI IPPEYIKRRW TKRARAGDCF DWRRREIVAD  480
PKIMISTRYR ELAPAMIKVA TRAAMSEDTS KVAITVISDL AKRVELLLSE SEEQPLQNKK  540
NLNMEERDKI EIVNEMGEAV VVSDSEPTSV SFEEYMFMGC RSSTDSVSMH SMSQTVNGPP  600
NAIAPDIDES ETVHRLANQG PPTSVLTELM HLKFSIFSKH NFVRDVLMV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-42	FAR1 family protein