PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027123400.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 258aa    MW: 29472.5 Da    PI: 8.7471
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027123400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.86.4e-2263146189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     ++Y+ YAke+GF+vr+++s  +++++e + + ++Cs +g+++ ++ +     r r+etrtgC a+l+++  ++++w+v ++ leHnH l
  XP_027123400.1  63 NYYSCYAKEMGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKEVN-----RLRKETRTGCPAMLRMRIVDSKRWRVVEVTLEHNHLL 146
                     69****************************************99888.....99*********************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MEEVSVNGVN SEQAIEGQGC ETFLEIDDER ADLDIQNDIP DGRKEFVEPA VGMEFESYED  60
AYNYYSCYAK EMGFRVRVKN SWFKRNSKEK YGAVLCCSSQ GFKRIKEVNR LRKETRTGCP  120
AMLRMRIVDS KRWRVVEVTL EHNHLLGSKI CKAVKKMGTG SKRKLQSSSD SEVRTVKLYR  180
ALVIDAGVNG NSNITVRESR SSSDHSDQLS LKKGDAQAIY NYLCRMQLTN PNFYISVVHT  240
NKNTKCYIHL PTSCIYVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.16e-88FAR1 family protein