PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027123440.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 234aa    MW: 26461.9 Da    PI: 8.6273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027123440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08114161455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR +iN+++  L++++P +    +k +  a +L + ++Y++sLq
  XP_027123440.1 114 SHSLAERVRRGKINERLRCLQDIVPGC----HKTMGMAVMLDEIINYVQSLQ 161
                     8*************************9....788*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MEMMSQFPEL NPGALDSSNF TNVQPSMGFS FHERSHLFSA YDHTLHEGKK RKLTDTPESS  60
SANSSAQISE NGSRTKNCSQ ITGKGKRIRS NRKDEEKPKE VVHVRAKRGQ ATDSHSLAER  120
VRRGKINERL RCLQDIVPGC HKTMGMAVML DEIINYVQSL QNQVEFLSMK LTAASNFYDF  180
NRETDTIDTL QRAKAFEAMK MQKLMKEEFD GVPSTQVGPL DQTFGCYPSL PFNT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.12e-61bHLH family protein