PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027123713.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19431.2 Da    PI: 9.875
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027123713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.36.2e-161853439
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    e + n +vtfskRrng++ KA+EL++L++aeva+++
  XP_027123713.1 18 EKNNNLHVTFSKRRNGLFMKANELCTLTGAEVALLV 53
                    567789****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MAKKLTRGHQ KVPIVEMEKN NNLHVTFSKR RNGLFMKANE LCTLTGAEVA LLVSLLEKGL  60
TLFVIHLSNL SLISLLETSH HLASMVALIT MLPTTMEIID ELNNKIIDLK TQLKANKKRE  120
EVLGQMIKEG HHKNWWQAPI GEMNLEQLLM MKKALEELKK KVQDELKCQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-18M-type_MADS family protein