PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027123726.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 119aa    MW: 13302.2 Da    PI: 10.271
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027123726.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.94.1e-118471049
                    HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +  fskRrn ++ KA+ L++L +ae a+++fs+  k y +
  XP_027123726.1  8 HDNFSKRRNDLFMKASKLCTLNGAELALLVFSPGKKAYAF 47
                    557******************************9998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    
MGKKNNLHDN FSKRRNDLFM KASKLCTLNG AELALLVFSP GKKAYAFGHS SFESAIDKFL  60
GNKASPSIHG GTDHHVVPNH HGDNISELNK IINLKKQLEA NKKREEVLVQ MIQEGQHKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-22M-type_MADS family protein