PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123964.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 520aa MW: 60842.3 Da PI: 9.3268

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.8	3.7e-23	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++GFsvrk + +k ++g +t+r++ C keg +++ k + + +rtra +tgC ak+++ + + + k++v++l+leHnHel XP_027123964.1 26 KFYNKYAFKMGFSVRKYYLNKD-KDGVTTSRRYSCCKEGVKRKYKGD-VMPKRTRAPMKTGCGAKMVIVLFRgTMKYRVHDLVLEHNHEL 113 6***************9998.8999************9999.9999**************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MDCSKLAEDG TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KYYLNKDKDG VTTSRRYSCC 60 KEGVKRKYKG DVMPKRTRAP MKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCTH 120 MMPSQRKSHE LMGKEAGGMG NVGYTREELK RYLRTRRERS LKYGEAGMLI DYKFFGDVIT 180 FDTTYKTNKE YRPLGVFVGF NQHRQIVIFG VALMYDETID SFKCVFGTFL EPMCGKRPST 240 ILTDQDLAMA AALSVVMPKT FHGLCTFHIK RNFMKHLGNH YKENSDLPYM FGACMYEFEE 300 VEQFNRVWET MVKKHNLENN EWLSGLYRIR DKWATCMMKE RWTAGMRSTQ LSESLNTTIK 360 NHLKLDHDLV QFFRHFNRVV DEKRHNELIA EYEMRQKLPM VGLRQTPMLV HASETYSPTV 420 FVAFQNEYGE STAMVILRQQ DAAIIVEFAV MRYDGGPERI VVFNRNDLSV RCSCKKYENE 480 GILCGHALKV FDTVGIKIIP PEYIKRRWTK RARARDCFDR

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MDCSKLAEDG TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KYYLNKDKDG VTTSRRYSCC  60
KEGVKRKYKG DVMPKRTRAP MKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCTH  120
MMPSQRKSHE LMGKEAGGMG NVGYTREELK RYLRTRRERS LKYGEAGMLI DYKFFGDVIT  180
FDTTYKTNKE YRPLGVFVGF NQHRQIVIFG VALMYDETID SFKCVFGTFL EPMCGKRPST  240
ILTDQDLAMA AALSVVMPKT FHGLCTFHIK RNFMKHLGNH YKENSDLPYM FGACMYEFEE  300
VEQFNRVWET MVKKHNLENN EWLSGLYRIR DKWATCMMKE RWTAGMRSTQ LSESLNTTIK  360
NHLKLDHDLV QFFRHFNRVV DEKRHNELIA EYEMRQKLPM VGLRQTPMLV HASETYSPTV  420
FVAFQNEYGE STAMVILRQQ DAAIIVEFAV MRYDGGPERI VVFNRNDLSV RCSCKKYENE  480
GILCGHALKV FDTVGIKIIP PEYIKRRWTK RARARDCFDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-83	FAR1 family protein